v2 Release January 2026

The Privacy Layer for Molecular Data

An orchestration engine that allows humans and machines to explore and collaborate without exposing sensitive IP.

The World We See

Across drug discovery, materials science, and industrial chemistry, valuable intelligence remains locked away, pinned between the desire for collective insight and the requirement for sovereign control.

Meanwhile, new AI tools are emerging faster than governance can keep up. On the ground, this tension looks like two distinct patterns: The Graveyard and The Fortress.

The Graveyard

Billions in sunk R&D sit dormant in archives or failed programs, degrading by the day. What could inform the next wave of discovery simply fades from view.

90%
Dark Data
An overwhelming majority of unstructured research data is never analyzed.[2]
$28B
Wasted / Yr
On irreproducible preclinical research in the US alone.[1]

The Fortress

Facing IP risk, AI risk, and regulatory uncertainty, institutions raise new walls. Access is narrowed to a handful of internal teams and tightly controlled workflows.

$110B
Locked Value
Projected annual GenAI impact on Pharma (Contingent on data access).[3]
x200M
Behind the Wall
Ratio of private enterprise data to the amount of public web data (Common Crawl).[4]

Our bet is simple: if we make it safe for molecules to speak without revealing themselves, we can turn redundancy into collaboration and dark data into opportunity.

The Substrate Solution for an Agentic Age

We operate as neutral privacy infrastructure, providing encrypted compute and controlled introductions when there’s a real fit. Your data. Your IP. We never want to see it.

SDK & Headless API

Don't rip and replace. Our middleware plugs directly into existing TTO systems and LIMS to work with assets where they live.

Sovereign Compute

Use homomorphic encryption to run similarity and property checks on molecules to verify matches without ever exposing raw structures.

Agent-Ready Interface

As autonomous toolsets proliferate, they’ll need safe ways to explore IP. MX3 lets your assets be discoverable to AI research agents, safely and anonymously.

moleculematchmaker.com/grand-pool
MX3 Grand Pool Interface
The Grand Pool UI

A Seat at the Table for
Every Intelligence

We believe the future of discovery is hybrid. That’s why MX3 is built with workflows so people and machines can work together.

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Where We Fit

Shelved Assets

Revive solid science that's been paused due to funding or strategy shifts.

Simultaneous Invention

Turn competition into collaboration before resources are wasted.

Academic Licensing

Enable secure, intentional outreach for underutilized IP.

Data Valuation

Monetize early-stage data with attribution and control.

Ready to Find Your Match?

Join our network of thoughtful collaborators and secure your next opportunity with confidence, clarity, and discretion.